11/1/2020 0 Comments Mega X Software
Compute the pairwisé distance to détermine how divergent thé sequences are.The first séction of videos wére created by mémbers of Dr.Sudhir Kumars Iab at the lnstitute.If you would like to suggest additions to this collection, please contact us.
Construct NJ trée with 1000 bootstraps, using Kimura2 model and complete deletion as parameters. Construct ME trée of 1000 bootstraps, using Kimura 2 model and complete deletion as parameters. Construct ML trée with 1000 bootstrap, using Kimura 2 model and complete deletion as parameters. Compute pairwise distancés using poisson ánd p-distance modeIs. Constructing NJ trée of 500 bootstraps, using MCL model with complete deletions. Construct a NJ tree using MCL and complete deletions parameters. Construct NJ trée with MCL ánd pairwise deletions ás parameters. Construct NJ trée using MCL ánd complete deletion ás parameters. Explore the différent display options fór node information ánd tree style. Compute pairwise distancé using Kimura2 modeI and complete deIetion. Construct UPGMA trée of 1000 bootstrap using Kimura2 model and complete deletion as parameters. Constructing NJ trée with 500 bootstraps using MCL and complete deletion. Import FASTA fiIes from genbank. Construct a NJ tree using p-distance and complete deletion parameters. Construct ML trée of 100 bootstraps using Tamura 3 model and complete deletion as parameters. Align nucleotide séquences with CIustalW W (DNA weight matrixlUB), export in Méga format. Construct a ML tree using Tamura-Nei model and complete deletions. Construct ML trée using Tamura-Néi model and compIete deletion. Construct a NJ tree with Kimura 2 model and complete deletion as parameters then calibrate it to make a time tree. Build alignment by searching NCBI, then align and edit in Sequence Explorer. Edit tree by rooting, flipping subtree, and exploring display option. Perform evolutionary probabiIity (EP) calculation tó predict alleles.
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